Hmmm, Full A2k2 to LT'06 ... upgrade? ... I dunno ... sounds like a downgrade, but who am I to judge ...
There is a program available (I think it is in the migration assistance) that checks your code for command calls that will cause problems. For the most part the code will work fine, however some command calls had different argument orders and the inclusion of a "-" before certain commands to prevent dialog popups would likely be required in R14 to '06 conversion.
As deegeecees said, post them here and we will help you fix 'em if there is a problem.